# SNP Report for BAM #1142 generated Wed Jan 20 20:38:10 2021 # # BAM files contains the raw data reads of a sequenced DNA sample. This is a # summary of positive SNP results in the processed BAM. Entries of very low # quality and reliability are eliminated from the report. The fields are: # # POS: The position of the Y chromosome being reported. # ANC: The ancestral value -- the value that is expected to be seen at that position. # DER: The derived value -- the actual value found at the position. # DEPTH: The percentage of reads in which the derived value was found. # COUNT: The number of strands successfully read. # AV_MAPQ: The average mapping quality as determined by the lab. # AV_QUAL: The average read quality as determined by the lab. # NAME: The name(s) given to the stated mutation. # # DEPTH: # # Ideally, depth would be in the high 90s percentage points. The following # sample line shows four reads at the stated position, but only 50% of them # were read as having the mutation. Furthermore, the quality is very low. # It's safe to say that this tester is not positive for BY44247. # # 24058500 C A 50.00 4 11.2 10.5 BY44247 # # COUNT: # # The higher the count, the better. But a single high quality read can be # acceptable if matches are found in other samples. # # QUALITY: # # The quality fields are assigned by the lab. Obviously, the higher the value, # the better. The AV_MAPQ (average map quality) can be as high as 60, and the # AV_QUAL (average read quality) can be 40. # # The following example line represents the importance of reporting # unpromising reads. The depth is only 68%, which might normally be # sufficient reason to ignore it, but there are several considerations. There # are a total of 114 reads, and the quality of those reads is great. # Furthermore, every tested descendant of John Cooley of Stokes County, North # Carolina (c1738-1811) has similar reads for this SNP. Therefore, we count # it as good. # # 13868854 A G 68.42 114 60.0 33.6 FGC39374,YP4494 # # The following data is TAB delimited. # # POS ANC DER DEPTH COUNT AV_MAPQ AV_QUAL NAME 10015372 G A 82.76 58 60.0 36.3 A619 10018298 T G 100.00 1 60.0 40.0 MF109296 11702127 T G 100.00 14 58.1 38.3 E159,FGC36,Y409 11718830 A G 100.00 45 60.0 37.6 E207,Y410 11742833 A G 100.00 21 60.0 37.3 PF6445,YSC0000159 11748557 T A 70.00 10 53.2 36.0 BY26354,rs111213921 11748574 G A 71.43 7 60.0 35.7 A18919,BY26355 11748577 T A 71.43 7 60.0 36.9 A20028,BY26356 11748588 T C 71.43 7 60.0 36.3 BY26357 11748614 A G 71.43 7 60.0 37.7 BY43295 11757882 G A 71.43 7 60.0 35.9 PF6446 11813828 C A 100.00 20 57.0 36.8 FGC11883,Y2397 11855741 G A 100.00 1 60.0 40.0 PH763 11855751 C G 100.00 1 60.0 40.0 FT133791 11868726 G A 99.09 110 60.0 36.9 CTS1619,M653,PF6173 11885073 A G 100.00 19 60.0 38.4 MF109488,PF6448 11933917 T A 100.00 75 60.0 37.5 M515 11950642 A T 100.00 8 60.0 36.0 E215,MF41258,Y141 11950645 C T 100.00 8 60.0 34.8 CTS1795,F233 11971491 G A 100.00 15 60.0 37.7 YP4249 11995878 A T 96.05 76 60.0 37.7 PF6451,YSC0000166 12018039 C A 100.00 13 60.0 35.8 L145,M449,PF6175 12023935 G T 100.00 13 58.2 38.1 L77,MF41415 12072678 A G 100.00 15 60.0 36.4 CTS2134,FGC47,PF6253 12105986 A T 100.00 1 60.0 40.0 CTS2229,MF41604,PF6254 12110586 A G 97.53 81 52.4 37.2 L20,MF41620,S144 12152397 G T 100.00 4 60.0 38.5 PF6255 12191650 C A 66.67 3 60.0 35.7 FT234077 12196849 A G 100.00 25 60.0 37.2 CTS2466,MF41815,PF6453 12216135 C T 100.00 16 60.0 36.2 F1769,M662,PF6179 12295513 A G 100.00 43 60.0 36.4 CTS2664,PF6454 12387195 C T 100.00 1 60.0 40.0 PAGES00007,Page7 12411029 A G 100.00 161 59.8 35.2 F1794,PF6455 12432842 T C 100.00 15 60.0 37.9 CTS2891,M664 12493127 T A 100.00 44 60.0 37.1 F1808,M668,PF6181 12525421 C T 100.00 87 60.0 37.4 CTS3063,F1811,V2515 12529262 T C 100.00 83 60.0 36.6 A19949,L52,PF6541 12633530 T C 100.00 14 60.0 34.9 BY3584 12641592 A C 100.00 2 60.0 40.0 CTS3230 12763808 A G 100.00 11 60.0 34.9 A18732,BY26382 12824889 T C 100.00 33 60.0 37.1 YP4250 12844192 A C 100.00 11 60.0 38.6 CTS3475,PF6456,V2713 12879489 A C 100.00 6 59.8 38.5 CTS3527,M676 12884697 T A 100.00 19 60.0 37.7 CTS3534,M677,PF7518 12892231 G C 100.00 122 60.0 36.5 CTS3548,M678,V2747 12894437 G A 100.00 57 60.0 37.7 CTS3551,PF6183 12918840 C T 98.25 114 60.0 35.6 M198,PF6238 12925521 G C 100.00 20 60.0 37.7 CTS3575,PF6457,Y50202 12927200 G C 100.00 43 60.0 37.2 A18734,BY26383 12968100 T C 100.00 10 60.0 37.8 CTS3625,S4228 13114399 C T 100.00 65 55.2 38.0 CTS3848,CTS3848.1,CTS3848.2 13127267 C G 100.00 1 60.0 37.0 CTS3876,PF6458 13127543 C T 100.00 1 60.0 37.0 CTS3877,PF6184 13169007 C A 100.00 10 60.0 37.2 CTS3943,M680 13198955 G A 100.00 16 60.0 36.6 CTS3984,M681,PF6185,V2878 13206634 T A 100.00 144 60.0 37.2 YP355 13221267 T C 100.00 44 60.0 36.8 PF6570,S28,U152 13380098 T C 100.00 12 60.0 36.5 FGC22105,YFC006597 13398184 G T 100.00 151 60.0 37.5 CTS4244,PF6257,V2997,YSC0001279 13413655 G A 100.00 15 60.0 37.5 CTS4259,M683,PF6186 13476521 T C 100.00 91 60.0 38.1 S198,V3055,Z282 13547225 T A 100.00 71 60.0 37.1 CTS4465,M686,PF7519 13575010 T C 100.00 1 60.0 37.0 CTS4509,M687 13691535 A G 100.00 1 55.0 40.0 CTS4764,FGC59,PF6041 13706604 C T 100.00 1 60.0 40.0 Y68958 13751176 T G 100.00 1 60.0 40.0 MF69322 13751200 T C 100.00 1 60.0 40.0 YSC0000765 13767137 A G 100.00 8 60.0 37.2 L120,M516,PF6236 13868854 A G 68.42 114 60.0 33.6 FGC39374,YP4494 14071532 A C 100.00 55 60.0 37.3 PF6463 14074400 A T 100.00 21 60.0 37.6 CTS5287 14090297 A G 100.00 25 60.0 36.9 L168 14138744 G T 100.00 42 60.0 36.3 BY1237 14154025 C T 92.59 27 60.0 37.7 CTS5423,M692 14176216 T A 92.59 135 59.9 38.2 M12465,S2006,Y1427.1,Y1427.2 14203273 C T 96.43 56 60.0 37.1 M512,PF6239 14213392 C T 100.00 7 58.6 37.3 YP4251 14217880 C G 100.00 53 60.0 36.9 CTS5508,Z649 14264615 C A 100.00 4 60.0 39.2 CTS5577,FGC38,PF6464 14302728 A G 100.00 24 60.0 36.2 CTS5648,M695 14324992 G A 100.00 43 60.0 37.9 L457,PF6191 14382516 T G 71.79 39 60.0 35.7 DC22 14408564 T A 100.00 130 60.0 37.6 L122,M448,PF6237 14451527 G T 100.00 18 60.0 35.8 CTS5936,M698,PF6192 14480011 C A 96.51 86 60.0 37.5 CTS5979,M700,PF6193 14489384 C T 100.00 184 60.0 37.0 F2215,M701,PF6194 14547489 C T 93.75 32 60.0 37.0 F2234,M704,PF6195 14608133 T C 100.00 1 60.0 40.0 S492,Z384 14621704 G A 100.00 1 60.0 40.0 MF71194 14639945 A G 96.15 52 60.0 36.9 MF45748,PF6543,S1159,YSC0000191 14661990 G A 100.00 47 60.0 36.6 L761,MF45790,PF6258,YSC0000266 14822051 G T 100.00 120 60.0 37.5 F2328,M709,PF7522 14826488 C T 100.00 1 60.0 37.0 FT353855 14893189 A T 100.00 103 60.0 37.4 MF46243,YSC0000193 14901850 A G 95.83 48 60.0 34.6 MF46261,PF6466,YSC0000194 15020700 T C 100.00 64 60.0 38.3 CTS6832,MF46496,PF6467 15030080 T G 100.00 1 60.0 37.0 MF162269 15082375 G C 100.00 3 60.0 38.0 CTS6918,PF6196 15111026 G T 100.00 5 60.0 38.2 CTS6985,MF46682 15169378 G T 100.00 95 60.0 36.6 E101,M12191,MF12558,Y1271 15229607 G C 100.00 4 60.0 37.0 CTS7191,M719,PF6198 15285765 C T 100.00 91 60.0 36.9 CTS7275,MF47016 15288293 C T 100.00 5 60.0 38.0 CTS7278,M721,PF7524 15288905 A G 100.00 12 60.0 34.5 L388,MF47023,PF6468 15310041 T A 100.00 29 60.0 37.1 A7498 15316316 G T 100.00 1 60.0 37.0 MF47078 15349598 C T 100.00 12 60.0 36.5 CTS7400,FGC33,MF47139,PF6469 15399604 T A 100.00 8 60.0 37.2 CTS7500,M722,PF6199 15399653 C T 100.00 2 60.0 37.0 M8813,Z11827 15457381 C A 66.67 3 60.0 34.3 FGC73988,Y133931 15460214 C T 100.00 1 60.0 37.0 FT85096 15477638 T C 100.00 15 60.0 36.0 CTS7650,FGC44,PF6544,S1164 15483086 G C 100.00 24 60.0 37.4 CTS7659,FGC50,MF47400,PF6470 15541948 T C 100.00 1 60.0 40.0 MF99396 15541958 T C 100.00 1 60.0 37.0 MF99397 15541966 G C 100.00 1 60.0 37.0 MF99399 15634597 C T 100.00 57 60.0 36.5 YP4252 15644025 A G 100.00 4 60.0 38.5 CTS7941,FGC51,PF6472 15683008 C T 100.00 92 60.0 37.9 CTS8008,M726 15704183 T A 100.00 32 60.0 37.5 E128,S20246 15732138 C T 100.00 32 60.0 38.2 L11,MF47840,PF6539,S127 15732901 C G 100.00 47 60.0 37.8 CTS8127,YSC0001289 15779361 A G 100.00 48 60.0 37.4 L62,M513,PF6200 15830263 A G 100.00 6 60.0 36.7 CTS8336,FGC48,PF6474 15839387 C A 100.00 56 60.0 37.9 CTS8350,MF48067 15841756 G C 100.00 1 60.0 37.0 A16336,CTS8355,PF6103 15874807 A C 100.00 80 60.0 37.8 PF6475,S17,YSC0000269 15914975 A G 100.00 49 60.0 36.4 CTS8436,PF6259 15932343 T C 100.00 123 60.0 37.8 F2684,M733,PF6201 15935595 C A 97.37 38 60.0 37.9 L749,MF48148,PF6476,YSC0000290 15948398 G A 100.00 1 60.0 40.0 MF74762 15948400 G A 100.00 1 60.0 40.0 MF74763 15948504 G C 100.00 15 60.0 38.1 CTS8507,S575 15948510 G A 100.00 18 60.0 38.2 CTS8508 15948537 C G 97.73 88 60.0 37.5 L110,S4601 15983456 C A 100.00 97 60.0 36.9 CTS8591,FGC64,MF48251,PF6477 15986074 C T 100.00 1 60.0 40.0 MF48261 15997675 A C 100.00 59 60.0 37.0 CTS8612,MF48291,PF6260 16005313 T C 100.00 89 60.0 37.0 CTS8627,MF48310,PF6478 16025951 C T 98.67 75 60.0 37.2 CTS8665,FGC464,MF48350,PF6479 16050954 T C 97.67 86 60.0 35.7 L63,M511,PF6203 16055523 T C 100.00 39 60.0 36.8 CTS8728,L1063,MF48405,PF6480,S13 16068566 A C 99.17 120 60.0 37.7 L500,MF48436,PF6481 16097676 T A 100.00 7 60.0 37.3 CTS8797,M738 16100761 G A 100.00 1 60.0 37.0 MF48474 16136818 G A 100.00 9 60.0 37.6 MF48539,P311,PF6545,S128 16282754 C T 100.00 53 58.4 37.6 L752,PF6483 16300810 T A 100.00 51 60.0 37.5 YP4253 16425687 A G 100.00 17 52.2 36.5 CTS8896,YSC0001292 16505716 T C 100.00 4 60.0 36.8 CTS9018,FGC188,PF6484 16544628 C G 100.00 96 60.0 36.4 MF48762,P297,PF6398 16575802 A T 100.00 50 60.0 35.4 CTS9108,FGC21776 16607685 C T 100.00 95 60.0 36.9 MF48901,PF6485,S3 16753418 T C 100.00 39 60.0 36.6 L753,MF49154,PF6486,YSC0000018 16795356 C A 100.00 80 60.0 37.0 MF49229,P310,PF6546,S129 16797762 T C 100.00 58 60.0 36.7 S5302 16802561 T C 100.00 56 60.0 38.0 L278,MF49249 16809006 A G 100.00 79 60.0 36.8 F2901,M742,PF6204,V3610 16831175 C T 100.00 23 60.0 38.1 CTS9510,V3625 16833360 C T 100.00 40 60.0 35.3 CTS9515,M744 16869175 A G 100.00 10 60.0 37.9 CTS9596,M745,PF6205,V3655 16908460 C G 100.00 1 60.0 40.0 L502,MF49498,PF6487 16910108 C A 97.44 39 60.0 37.6 YP4254 16912934 C G 80.00 5 60.0 37.2 CTS9690,M747 16923963 C T 100.00 1 60.0 37.0 MF49530 16933244 C T 100.00 53 60.0 35.5 CTS9733,S3856 16936512 T G 86.96 23 60.0 38.0 S699,Y783.2 16938331 T C 100.00 13 60.0 38.4 CTS9739,M749 16943009 T C 100.00 77 60.0 37.6 L757,MF49580,PF6488,V3721,YSC0000293 16946503 C A 100.00 41 60.0 36.9 CTS9754,M750,PF6206,V3726,Z650 16956576 C A 97.83 46 60.0 37.3 CTS9779 16966699 G A 100.00 5 60.0 38.0 CTS9808,S3449 17029875 T A 98.72 78 60.0 37.4 F2948,M752,PF7527,V3820 17048462 A G 98.98 98 60.0 35.9 F2957,M753,V3842 17067660 A G 100.00 60 60.0 37.6 L1353,PF6489,V3866,YSC0000294 17067726 C A 100.00 64 60.0 38.4 CTS9972,PF6261,V3867 17071963 G T 100.00 2 60.0 32.0 A21217 17097892 G A 100.00 1 55.0 37.0 M8151 17108966 C T 100.00 24 60.0 35.9 CTS10042,M754,PF6207 17179479 C T 100.00 34 60.0 37.5 CTS10149,MF50025,PF6490,V3993 17260506 T G 100.00 42 60.0 38.2 F3032,M756 17263414 C T 100.00 9 60.0 39.0 M514,PF6240 17307985 G A 77.78 9 60.0 38.0 F3044,V4100,Z651 17392779 A T 100.00 55 60.0 37.4 L820,PF6262,V4199,YSC0000211 17418583 A G 100.00 1 60.0 37.0 MF78253 17953886 C T 95.83 24 59.5 37.5 FGC32012,Y205 18649421 A G 98.85 87 60.0 36.3 PF6494 18661373 C T 100.00 75 60.0 37.3 YP4255 18666909 A G 100.00 115 60.0 36.8 PF6495 18676338 G A 99.12 114 60.0 37.7 PF6496,YSC0000213 18906599 T C 100.00 2 60.0 36.5 MF1630 18997169 A C 100.00 2 60.0 38.5 MF50761,PF6263 19015194 G A 95.65 23 60.0 37.7 E19,M12193,S2003 19020251 C T 100.00 28 60.0 37.0 M759,PF7540 19021757 G A 100.00 16 60.0 37.7 L780,MF50825,PF6105,V7541,YSC0000254 19032335 T G 100.00 28 60.0 37.2 FGC11882,Y2395 19060982 G C 99.42 171 60.0 37.4 MF50894,PF6497,YSC0000219 19063651 C A 100.00 105 60.0 36.4 F3159,M761 19087904 G A 100.00 110 60.0 37.7 F3166,M763 19134286 C T 100.00 47 60.0 37.0 M766,PF6211 19137741 T C 100.00 51 60.0 37.2 M767,PF6212 19140380 C T 100.00 93 60.0 35.7 M768,PF6213 19149092 T G 100.00 15 60.0 35.8 M769,PF6214 19150178 A C 100.00 103 60.0 38.0 MF51052,PF6498 19196667 A G 100.00 20 56.8 36.2 L585,MF51135,PF6499 19205105 C A 100.00 104 60.0 35.4 F3185,M771 19230144 C T 99.30 142 60.0 36.4 F3194,M773 19238860 C T 100.00 75 60.0 38.1 F3197,M774 19248954 T G 100.00 25 60.0 36.2 MF51223,PF6500 19301026 A C 98.85 87 60.0 38.0 M775,PF6215 19322798 G A 100.00 13 60.0 37.2 S4458 19333117 A G 97.01 67 60.0 35.9 FGC32015,Y209 19346033 C T 100.00 29 60.0 36.6 M779,PF6216 19366371 C T 100.00 5 60.0 38.2 L1068,MF51476,PF6264,YSC0000223 19388301 T C 100.00 1 60.0 37.0 BY155065 19392582 A G 100.00 2 60.0 35.0 MF16315,PF6265 19396412 T G 100.00 109 60.0 36.2 L1345,MF51542,PF6266,YSC0000224 19442779 T C 99.03 206 60.0 37.1 FGC32013,Y210 19582208 C A 100.00 1 60.0 33.0 FGC16,MF16366,S3843,Y154 19599389 G T 100.00 7 60.0 37.4 MF51867,PF6504,S4969 19622400 A G 100.00 83 60.0 37.1 L1350,MF51912,PF6505,YSC0000225 19639836 A G 100.00 48 60.0 37.3 MF51936,PF6506 19790502 T C 100.00 73 60.0 36.8 E56,FGC26,S23766,Y155 19814417 T A 100.00 7 60.0 37.4 PF6217,S339,Z283 19821941 T C 100.00 36 60.0 36.5 MF52265,PF6507 19831958 A G 100.00 1 60.0 37.0 MF52298,PF6508 19834086 A T 100.00 145 60.0 36.4 L506,MF52308,PF6267 19841771 C T 100.00 89 60.0 35.9 M782,PF6218 19915596 G A 100.00 15 60.0 35.2 S5301 19947209 G A 100.00 41 60.0 38.0 YP609 19975864 T C 100.00 15 60.0 36.5 YP4256 19995425 A C 100.00 182 60.0 37.5 MF52579,P312,PF6547,S116 20028315 T C 100.00 136 60.0 38.0 PF7530 20028485 G A 98.84 86 60.0 34.5 MF52651,PF6509 20352983 G C 98.64 221 60.0 36.7 FGC32014,Y215 20367110 T G 100.00 65 60.0 37.2 PF7531 20427116 T C 97.89 95 60.0 36.7 M784,Y216 20436809 A G 100.00 1 60.0 37.0 MF104211 20449993 T G 96.55 29 60.0 31.9 FGC11881 20468702 A G 100.00 5 60.0 36.2 PF7542 20503104 T C 97.25 109 60.0 36.8 CTS10627,M786 20514932 G A 100.00 30 60.0 37.0 F3337 20549574 T A 97.22 72 60.0 37.0 L144,S175,Y154376 20560694 C T 100.00 5 60.0 36.8 L1349,MF52993,PF6268,YSC0000231 20577481 C T 96.36 55 60.0 36.0 M269,MF53029,PF6517 20613254 T C 100.00 1 60.0 40.0 MF53107 20634811 C T 100.00 103 60.0 36.5 CTS10834,MF53143 20641441 G C 100.00 31 60.0 37.0 CTS10847,M791,PF6221 20714482 C A 100.00 2 60.0 37.0 CTS10993,M793 20727132 A G 90.91 22 59.0 36.0 L754,MF53266,PF6269,YSC0000022 20735977 C T 100.00 6 60.0 36.2 F3364,M794,PF6222 20804870 C T 100.00 10 57.0 37.1 L449,PF6223 20816423 A T 100.00 79 60.0 37.7 CTS11148,M796 20834286 G T 89.58 48 60.0 36.4 CTS11184,M797,PF6224 20835798 T C 100.00 1 60.0 37.0 Y162711 20888132 C G 96.23 53 60.0 37.4 F3398,PF7532 20937345 T C 98.96 96 60.0 37.6 CTS11411,M798 20937858 A C 100.00 21 60.0 38.1 MF53635,PF6518 20962481 T G 99.15 118 60.0 37.3 CTS11468,FGC49,MF53671,PF6520 20982581 T C 100.00 34 60.0 37.9 Z286 20990500 A T 100.00 20 60.0 37.5 CTS11530 21037753 A T 100.00 3 60.0 35.7 CTS11633 21047832 T A 100.00 1 60.0 40.0 Y144564 21047841 C T 100.00 1 60.0 40.0 FGC68819 21074970 A G 100.00 21 60.0 37.2 CTS11720 21080860 C A 100.00 67 60.0 37.1 CTS11734,M800,PF6226 21081049 C G 100.00 2 60.0 36.5 L1348,MF53749,PF6521,YSC0000238 21154379 C T 100.00 7 60.0 38.3 CTS11853,PF6227 21188074 A G 100.00 45 60.0 37.9 CTS11913,M801,PF6228 21193023 A C 100.00 19 60.0 36.9 E34,FGC7450,S4344,Y156 21209708 A G 100.00 5 60.0 38.2 CTS11934 21217368 A G 100.00 51 60.0 36.8 CTS11948,FGC54,MF53998,PF6522 21241863 A G 100.00 64 60.0 37.5 CTS11985,MF54034,PF6523 21255319 A G 100.00 56 60.0 37.8 CTS12010,M802,PF7533,Z648 21256962 A G 100.00 11 60.0 38.0 YP4257 21257151 T G 100.00 1 60.0 40.0 FT199791 21291079 C T 96.55 29 60.0 36.1 MF54150,PF6524 21311315 T A 99.34 151 60.0 37.6 L146,M420,PF6229 21315050 T G 98.80 83 57.4 38.1 MF54202,PF6525 21397882 A C 96.00 50 60.0 37.2 F3466,M803,PF7534 21457141 G A 100.00 42 60.0 35.7 F3494,M804,PF6230 21610174 T A 100.00 79 60.0 35.8 S5153 21638474 T G 100.00 29 60.0 36.4 F3551,PF6231,V8042 21663887 A T 100.00 1 60.0 33.0 A13801 21681614 C T 97.50 40 60.0 36.6 F3564,M5824,M5824.2 21712839 T A 100.00 80 59.5 37.7 M807,Y220 21815957 G T 100.00 72 60.0 38.2 F3570,PF6233 21827447 G T 100.00 37 60.0 36.0 MF54917,PF3141,U5 21837909 A G 100.00 32 59.2 37.0 MF54941,PF6271 21846615 A C 100.00 6 60.0 37.8 PF6272 22235256 T A 73.33 15 60.0 37.1 MF35670 22248465 A G 96.83 63 60.0 37.7 MF54982,PF6527 22298475 T C 100.00 8 60.0 36.9 L1351,MF55085,PF6528,YSC0000240 22301842 A C 100.00 34 60.0 37.2 E226,FGC15,S26186,Y159 22307695 G T 100.00 21 56.5 32.9 E42,Y160 22308393 T G 100.00 27 60.0 36.0 F3644,M810 22315970 T C 100.00 44 60.0 36.7 F3650 26428573 T C 100.00 1 51.0 37.0 CTS12321 26441748 C T 75.96 104 51.5 37.3 CTS12458 26444131 A G 100.00 21 60.0 35.7 CTS12478,PF6529 26463600 T C 100.00 2 60.0 32.0 MF106229 26463606 C G 66.67 3 60.0 35.7 MF106230 26542908 G T 100.00 1 60.0 40.0 CTS12746,M815 26586954 G C 100.00 2 60.0 38.5 L389,MF55262,PF6531 26610695 A T 100.00 2 60.0 40.0 CTS12941,M817 26615037 C T 100.00 5 60.0 37.0 A12123,YFS514147 26624969 G C 100.00 38 60.0 36.4 CTS12972,FGC52,PF6532 2789135 C T 100.00 32 60.0 37.2 PF6234,Page65.1,Page65.2,SRY10831,SRY10831.1,SRY10831.2,SRY1532.2 2793653 A G 100.00 37 60.0 37.0 L311,S4144 2800415 T C 100.00 15 60.0 37.9 PF6399,S10 2815374 G A 100.00 1 60.0 40.0 FGC76767 2818514 A G 100.00 5 60.0 36.8 CTS46 2846003 G T 100.00 64 60.0 36.9 YP4491 2891495 A G 100.00 1 60.0 40.0 MF56561 2957277 A T 100.00 1 60.0 37.0 MF85355 2957281 G A 100.00 1 60.0 37.0 BY56674 2957304 A G 100.00 1 60.0 40.0 FT135270 2974171 A T 100.00 7 60.0 38.7 L49,L49.1,L49.2,M12188,PF6276,S349,S349.1 2987256 C T 100.00 59 59.0 35.1 CTS262,M601 3019783 A C 100.00 58 60.0 35.2 M343,PF6242 3080393 T C 100.00 1 55.0 37.0 Y170 3406558 C T 100.00 11 56.5 34.7 L566,PF7512 3846274 T C 100.00 55 60.0 37.9 A19935,YSC0000057 3852132 A C 64.00 75 60.0 30.2 A18941,DC556 3852176 A G 62.96 54 60.0 35.8 BY23415 3852811 G A 62.07 29 60.0 37.7 S8757 3852846 A G 71.43 14 60.0 37.0 BY23416 3852852 A G 83.33 12 60.0 35.0 BY23417 3852859 T C 81.82 11 60.0 35.8 BY23418 4484110 A G 100.00 51 60.0 37.8 A19936,PF6409 56825766 G A 100.00 2 60.0 38.5 BY26471,DC675 56825806 A G 100.00 2 60.0 40.0 BY26705 56826513 C T 75.00 4 50.8 38.5 BY29580 56826520 G T 75.00 4 50.8 37.8 BY29581 56826529 A C 75.00 4 50.8 36.8 FGC64299 56826998 T G 100.00 4 56.8 37.8 BY26729 56827062 G C 100.00 3 60.0 31.3 BY26509 56827216 C A 100.00 1 60.0 37.0 BY26730 56827226 A C 100.00 1 60.0 37.0 BY29582 56827229 C T 100.00 1 60.0 37.0 BY26731 56827281 T C 100.00 1 60.0 37.0 BY26732 56827291 G T 100.00 1 60.0 37.0 BY29583 56827366 C A 100.00 1 60.0 37.0 BY26512 56827687 T C 100.00 5 60.0 38.0 BY26734 56827717 T C 100.00 7 60.0 37.7 BY26735 56827795 A T 100.00 6 60.0 38.0 BY26736 56828818 G C 100.00 1 60.0 40.0 BY26747 56829198 C T 85.71 7 60.0 37.1 BY26542 56829389 G C 66.67 12 55.1 38.2 BY26754 56829399 C T 75.00 12 55.1 37.8 BY26756 56829409 C G 81.82 11 54.6 37.2 BY26757 56829430 T C 90.00 10 58.2 36.4 BY26758 56829432 A T 90.00 10 58.2 36.8 BY26759 56829460 T G 100.00 9 58.1 34.4 BY26760 56829489 T C 77.78 9 58.1 37.8 BY26761 56829990 C A 100.00 2 60.0 32.0 BY42543 56829995 G T 100.00 4 60.0 36.5 BY26579 56830109 A G 100.00 2 60.0 38.5 BY26772 56830635 A G 100.00 1 60.0 40.0 BY26784 56830657 T C 100.00 1 60.0 40.0 BY26785 56830690 T C 100.00 2 60.0 35.0 BY26787 56830739 T C 100.00 2 60.0 37.0 BY26788 56831210 A T 100.00 2 59.0 38.5 BY26798 56831582 C T 100.00 2 60.0 38.5 BY26813 56831641 G C 100.00 2 60.0 37.0 A16460 56831681 G C 100.00 2 60.0 37.0 BY26814 56834922 C T 100.00 1 60.0 40.0 BY26862 56835807 G C 100.00 1 60.0 37.0 BY26868 56837010 G C 100.00 1 60.0 37.0 BY26894 56837557 T C 100.00 2 60.0 35.0 BY26903 56842427 C T 100.00 1 60.0 40.0 A19405,BY26676 56842432 G C 100.00 1 60.0 37.0 A19619,BY26677 56851597 A C 100.00 2 60.0 38.5 BY29682 56851717 A G 100.00 1 60.0 40.0 BY228082 56876257 A C 66.67 3 60.0 38.0 BY227600 6839849 T G 100.00 137 60.0 37.0 CTS358,YSC0001270 6885470 A G 100.00 49 60.0 36.9 L23,MF36433,PF6534,S141 6887730 C T 100.00 1 60.0 40.0 MF143 6934946 C T 88.89 18 60.0 37.1 CTS501,M604,PF6152 6985245 C A 100.00 41 60.0 32.7 CTS570 7038033 A G 100.00 58 60.0 37.6 M459,PF6235 7044951 G T 97.89 95 60.0 37.9 CTS623,FGC37,PF6419 7063768 C T 98.55 69 60.0 36.0 L448,S200 7064749 A T 100.00 24 56.7 38.5 L98,S4072 7086803 C T 100.00 1 60.0 40.0 MF57839 7087827 A C 100.00 8 60.0 38.9 F886,PF6153 7099800 G A 100.00 1 60.0 40.0 CTS710 7205382 A G 100.00 2 60.0 38.5 CTS894,PF6420,YSC0001293 7210708 G A 100.00 21 60.0 37.1 CTS903,M610,PF6154 7351204 C A 100.00 5 60.0 37.6 CTS1123 7352686 G A 100.00 28 60.0 37.5 F69,L773,MF37230,PF6421,YSC0000276 7369190 G A 100.00 1 60.0 40.0 Y195458 7370824 T C 100.00 1 55.0 40.0 FGC59524 7382194 G A 100.00 106 60.0 37.9 CTS1169,MF37280 7392136 G C 100.00 8 60.0 37.1 F937 7439455 G T 100.00 17 60.0 38.1 CTS1277,M11795 7439457 G T 82.35 17 60.0 37.3 CTS1278,M11796 7453289 A C 100.00 21 60.0 35.7 E54,FGC21,S4105,Y136 7455837 C T 100.00 23 60.0 37.6 F947,M617,PF6156 7479901 C T 100.00 12 60.0 37.1 CTS1340,M618,PF6157 7496241 G A 100.00 29 59.7 36.8 CTS1367,MF37513 7510315 T C 100.00 1 57.0 37.0 Y61971 7523068 C T 92.86 14 59.7 38.4 CTS1415,MF37545 7523076 C T 86.67 15 59.7 38.8 CTS1417,M11798,MF37547 7523093 C T 100.00 10 59.6 38.7 CTS1418,MF37548,PF5478 7523101 G A 100.00 10 59.6 39.1 CTS1420,MF37550,PF5479 7523120 T C 100.00 8 59.5 36.9 CTS1421,M8208,MF37551,PF6423 7523123 A G 100.00 8 59.5 37.2 CTS1422,M8209,MF37552 7662815 G T 100.00 13 58.6 37.0 YP4248 7677928 C A 100.00 24 60.0 37.3 F989,M619,V1190 7815017 G A 100.00 12 60.0 35.6 PF6158,S441,Z647 7839055 A G 100.00 10 60.0 37.6 YP4492 7847676 A C 97.62 42 60.0 38.3 F1050,M622,V1380 7862434 C G 100.00 5 58.4 38.2 A609 7891903 A G 100.00 5 60.0 35.6 FGC57,L1067,M12189,PF6424,SK2079,Z8148 7894906 C T 100.00 74 60.0 38.1 MF38063,PF6425 7898671 C T 100.00 62 60.0 35.0 MF38072,PF6426,YSC0000072 7898915 C A 97.92 96 60.0 35.1 M623,PF7514,V1412 7976449 G A 100.00 51 60.0 37.3 L303,MF38243,V1469 7995148 A G 100.00 2 60.0 38.5 L482,MF38282,PF6427 8022873 A G 100.00 31 60.0 36.7 M626,PF6159 8023147 C T 100.00 60 60.0 36.9 MF38340,PF6428 8032842 A C 100.00 17 60.0 36.5 E117,FGC41,M12190,SK2062,V1501,Y108,Z8135 8080660 T G 100.00 67 60.0 37.6 PF6246,V1532 8091978 A G 98.84 172 60.0 37.6 L822,MF38478,PF6247,YSC0000075 8103464 C T 85.71 21 60.0 36.8 MF38490,PF6429 8128997 C A 100.00 1 60.0 37.0 MF127474 8185553 G A 100.00 24 60.0 37.3 F1088,M629,PF6160 8202491 A T 100.00 38 59.1 36.4 MF38667,PF6430 8218774 G A 100.00 48 57.2 38.0 L309,MF38688 8242479 A T 100.00 1 60.0 37.0 MF38742,PF6248 8281307 G A 100.00 11 60.0 36.5 L265,MF38828,PF6431 8288487 T C 100.00 1 60.0 37.0 Z45284 8305747 C T 100.00 1 60.0 37.0 FT159709 8326269 A C 100.00 49 60.0 36.7 MF38907,PF6432,V1699 8344779 A G 100.00 12 60.0 37.2 M630,V1720 8346786 T C 100.00 5 60.0 37.0 A19938,PF6249 8365145 T C 100.00 14 60.0 38.9 L483,MF38979,PF6097,V1741 8377004 C T 97.50 80 60.0 37.3 PF6162,S224,V1754,Z645 8385622 T C 100.00 1 60.0 40.0 MF108145 8465416 G T 100.00 9 58.0 37.9 PF6163 8491489 A G 100.00 32 60.0 36.9 YP4493 8516393 T G 100.00 14 60.0 36.4 F1157,M631,PF6164,V1855 8543161 G A 100.00 47 60.0 37.5 MF39381,PF6434 8548938 G A 100.00 13 60.0 37.5 F4099,M633,V1902 8571501 A G 100.00 3 60.0 36.7 MF39456,PF6250,V1980 8595827 C T 100.00 13 60.0 36.2 F1224,V2035 8625969 A C 100.00 57 60.0 38.0 A7497 8634195 A G 100.00 24 60.0 37.1 L51,M412,MF39636,PF6536,S167 8665694 G A 92.86 14 60.0 38.0 M417 8710625 C T 96.43 56 60.0 37.5 M637,PF6165 8799138 G A 96.49 57 60.0 37.8 MF40004,PF6435 8826875 A G 100.00 43 60.0 37.7 MF40053,V2467,YSC0000077 8849155 C G 100.00 68 60.0 38.2 S221,Z284 8937484 A G 100.00 43 60.0 36.3 E32,FGC22,S11962,SK547,Y138 9056275 G C 100.00 1 60.0 40.0 BY35608 9056293 T C 100.00 2 60.0 38.5 BY29716 9056312 A G 100.00 2 60.0 38.5 BY29717,DC695 9056316 G C 100.00 2 60.0 38.5 BY29718,DC696 9056331 G A 100.00 2 60.0 37.0 BY28650 9056340 C T 100.00 2 60.0 33.0 BY28651 9056358 T A 100.00 2 60.0 35.0 A19932,BY28652 9056373 G A 100.00 2 60.0 38.5 BY28653 9056381 T G 100.00 2 60.0 38.5 BY28654 9056388 C T 100.00 2 60.0 36.5 BY28655 9056391 C G 100.00 2 60.0 38.5 BY28656 9056424 C A 100.00 1 60.0 40.0 BY29720,DC698 9160075 G A 100.00 78 54.5 37.2 M644 9247261 T G 97.56 82 56.1 37.5 MF40576,PF6540,YSC0000082 9332936 A C 100.00 52 58.7 37.6 M415,PF6251 9555339 T C 100.00 154 59.4 37.4 PF6437 9567834 C T 90.48 21 60.0 36.4 F1545,PF6168,V5016 9570113 A G 100.00 12 60.0 37.6 M649,PF6169 9597018 A C 100.00 41 60.0 37.6 M650,PF6170 9626469 T C 100.00 20 55.5 37.8 PF6438 9630559 G T 91.18 136 59.9 37.2 BY28810 9809371 T C 96.15 26 60.0 38.0 PF6439,SA27,YSC0000083 9934332 T A 80.95 21 60.0 33.2 A13510 9973185 C T 100.00 3 60.0 36.7 S255,Z367 13252161 C A 80.00 5 60.0 36.8 NOVEL